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Click on the following button to browse the Bovine IV genome(M32690) bovineIV
Accession: M32690(link to EMBL)
Definition: Bovine immunodeficiency-like virus, complete proviral genome.
M32690.fa
M32690.gff
conf file(.json)

Click on the following button to browse the Bovine IV genome(M74712) bovineIV
Accession: M74712(link to EMBL)
Definition: Bovine immunodeficiency-like virus Rev protein 1 (rev1) and Rev protein 2.
M74712.fasta
M74712.gff
conf file(.json)







3D structure of Bovine







Blast

Job Title: gb|M32690.1| (8482 letters)
submitted at Tue Dec 8 18:33:56 2009


Sequences producing significant alignments:
Accession Description Max score Total score Query coverage E value Max ident
L04974.1
Bovine immunodeficiency virus R29 gag protein (gag) and vif protein (vif) genes, complete cds; and unknown genes
1.045e+041.542e+0498%0.099%
L04972.1
Bovine immunodeficiency virus R29 pol protein (pol), vif protein (vif), and envelope glycoprotein (env) genes, complete cds; and unknown genes
80391.301e+0485%0.099%
L43131.1
BIV R29-1203 surface envelope protein gene, partial cds
2045276418%0.098%
L43130.1
BIV R29-1078 surface envelope protein gene, partial cds
2043274218%0.098%
L43132.1
BIV R29-289 surface envelope protein gene, partial cds
2006272018%0.098%
M74712.1
jbrowse
Bovine immunodeficiency-like virus Rev protein 1 (rev1) and Rev protein 2 (rev2) mRNA, complete cds
1567278115%0.0100%
AJ011527.1
Bovine immunodeficiency virus transmembrane gene
1085108515%0.082%
L06504.1
Bovine immunodeficiency virus R29 rev protein (rev) mRNA, complete cds
802176011%0.098%
L04973.1
Bovine immunodeficiency virus R29 tat protein (tat) mRNA, complete cds
765175111%0.098%
AY953094.1
Bovine immunodeficiency virus tat-rev protein mRNA, complete cds
71912548%0.099%
EF661980.1
Bovine immunodeficiency virus isolate 42 from Iran gag protein (gag) gene, partial cds
704 7044%0.098%
EF661978.1
Bovine immunodeficiency virus isolate 152 from Iran gag protein (gag) gene, partial cds
704 7044%0.098%
EF661979.1
Bovine immunodeficiency virus isolate 60 from Iran gag protein (gag) gene, partial cds
699 6994%0.098%
U34389.1
Bovine immunodeficiency virus OK reverse transcriptase (pol) gene, partial cds
641 6415%1e-17992%
L06525.1
Bovine immunodeficiency virus FL491 reverse transcriptase gene, partial cds
604 6045%2e-16891%
L06524.1
Bovine immunodeficiency virus FL112 reverse transcriptase gene, partial cds
604 6045%2e-16891%
L43127.1
Bovine immunodeficiency virus FL491 surface envelope protein gene, partial cds
586 85318%7e-16380%
M74711.1
Bovine immunodeficiency-like virus Env protein (env) mRNA, partial cds
586 6964%7e-163100%
U80939.1
Bovine immunodeficiency virus OK isolate OK14 surface envelope protein (env) gene, partial cds
579 92113%1e-16084%
AY426724.1
Bovine immunodeficiency virus isolate HSADL 944/01 nonfunctional gag polyprotein gene, partial sequence
564 5643%3e-15699%
AY346422.1
Bovine immunodeficiency virus isolate Hsadl 944/01 nonfunctional gag polyprotein (gag) gene, partial sequence
564 5643%3e-15699%
M90681.1
Bovine immunodeficiency-like virus mRNA sequence
558 8555%1e-15498%
U80937.1
Bovine immunodeficiency virus OK isolate OK02 nonfunctional surface envelope protein (env) gene, partial sequence
545 87211%1e-15084%
L43129.1
Bovine immunodeficiency virus OK clone 40 surface envelope protein gene, partial cds
545 87311%1e-15084%
AF548463.1
Bovine immunodeficiency virus strain 27.1 from Australia pol polyprotein gene, partial cds
542 5423%2e-14998%
AF548462.1
Bovine immunodeficiency virus strain 4.5 from Australia pol polyprotein gene, partial cds
531 5313%3e-14698%
AY346418.1
Bovine immunodeficiency virus capsid protein (gag) gene, partial cds
510 5103%4e-140100%
AB040420.2
Bovine immunodeficiency virus gene for envelope protein, partial cds, strain:Japanese 212
481 4813%3e-13196%
AB040426.2
Bovine immunodeficiency virus gene for envelope protein, partial cds, strain:Cambodian 48
475 5854%2e-12998%
AB040424.1
Bovine immunodeficiency virus gene for envelope protein, partial cds, strain:Cambodian 2*
472 4723%2e-12896%
AB040427.1
Bovine immunodeficiency virus gene for envelope protein, partial cds, strain:Cambodian 7.59
453 5524%7e-12396%
AB040421.2
Bovine immunodeficiency virus gene for envelope protein, partial cds, strain:Japanese 234
448 4483%3e-12194%
AB040429.2
Bovine immunodeficiency virus gene for envelope protein, partial cds, strain: Cambodian 21
444 4443%4e-12094%
AB040423.1
Bovine immunodeficiency virus gene for envelope protein, partial cds, strain:Paskistan 10
435 4353%3e-11794%
AF084310.1
Bovine immunodeficiency virus clone P57.9 surface envelope protein (env) gene, partial cds
394 3942%4e-10596%
AF084312.1
Bovine immunodeficiency virus clone P92.2 surface envelope protein (env) gene, partial cds
388 3882%2e-10396%
AB040419.1
Bovine immunodeficiency virus gene for envelope protein, partial cds, strain:Japanese PL
388 5154%2e-10392%
AB040425.1
Bovine immunodeficiency virus gene for envelope protein, partial cds, strain:Cambodian 15
387 3873%7e-10391%
AY346419.1
Bovine immunodeficiency virus isolate Hsadl 948/01 gag polyprotein (gag) gene, partial cds
381 3812%3e-101100%
AM937062.1
SIV-wrc Pbt-05GM-X02 virus proviral gag gene, pol gene (partial), vif gene, vpr gene, tat gene, rev gene, env gene, rev2 gene (partial) and nef gene
65.865.80%4e-0697%



Tree View

RID: HXPX98MT01N, query ID: gb|M32690.1
Click on the image to increase the size(directly linked to NCBI)



Global Alignment of Genome Neighbors


Bovine immunodeficiency virus, complete genome ( 1 neighbor)



Reference


Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14.



Interesting Pub related to Bovine


1. Kevin J. Garvey et al, NUCLEOTIDE SEQUENCE AND GENOME ORGANIZATION OF BIOLOGICALLY ACTIVE PROVIRUSES OF THE BOVINE IMMUNODEFICIENCY-LIKE VIRUSVirology Volume 175, Issue 2, April 1990, Pages 391-409 Read abstract

2. Andrea Gomez et al,The Bovine Immunodeficiency Virus Rev Protein: Identification of a Novel Lentiviral Bipartite Nuclear Localization Signal Harboring an Atypical Spacer Sequence, JOURNAL OF VIROLOGY, Dec. 2009, p. 12842–12853Read abstract



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